miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|293539458|gb|FS342627.1|FS342627 GGACAATGTTTCCACACCTTCAGGGGAAGCACCTAGTGTTTCTTCCTCTGGTAATCAACCACCACAACCCACAACCAAGA
AAAAACGAAACCTTCCTGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCGAAGACTCTAATGGCGACGAAC
AGATTCGTATGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGGTCACAATCTGCC
ATGGAAGCTGAGGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGTGTGTCCACCATG
ACCCTTCTCGAGCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGC
GAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAGAGAGTATAAATG
TGACTGCGGCACGGTGTTTTCGAGGAGGGATAGCTTCATTACTCATAGAGCTTTTTGCGATGCGTTGGCAGAGGAGAGTA
CAAGATCTCAGACTCAGAAGGCGAATTCGGAGTCTGAATCGAAGGTTTTAACGGCTGATTCTTCACCGCCGCCAGCTGCT
GCCACTGCCGCCGCCGCTAATGCTTCTACTACTCAGTCAAATAGTGGCATTTCCTCTGCTTTGCAGACACAGAACCTAGA
GTTGCCTGAAAATCCCCAACAAATCAGAGAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCA
GCAGCAGCTGCACCACCACAATCACTGCCACTACCAGCTC




Most similar to sp|Q9ZWA6|MGP_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis
           thaliana GN=MGP PE=1 SV=1
          Length = 506

 Score =  302 bits (773), Expect = 2e-81
 Identities = 139/166 (83%), Positives = 146/166 (87%)
 Frame = +2

Query: 68  PTTKKKRNLPGMPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK 247
           P  KKKRNLPG PDPEAEVIALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWK
Sbjct: 38  PLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWK 97

Query: 248 LRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGXXXXXXXXXXXXYAV 427
           L+QRTSKEVRKRVYVCPE +CVHH P+RALGDLTGIKKHFCRKHG            YAV
Sbjct: 98  LKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAV 157

Query: 428 QSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESTR 565
           QSDWKAHSK CGTREY+CDCGT+FSRRDSFITHRAFCDALAEE+ R
Sbjct: 158 QSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR 203